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Publications 2014

Publications 2014

  1. Abad MA, Medina B, Santamaria A, Zou J, Plasberg-Hill C, Madhumalar A, Jayachandran U, Redli PM, Rappsilber J, Nigg EA, Jeyaprakash AA. (2014) Structural basis for microtubule recognition by the human kinetochore Ska complex. Nat Commun. 5:2964.
  2. Agarwal S, Parashar D, Gupta N, Jagadish N, Thakar A, Suri V, Kumar R, Gupta A, Ansari AS, Lohiya NK, Suri A. (2014) Sperm
  3. associated antigen 9 (SPAG9) expressionand humoral response in benign and malignant salivary gland tumors.Oncoimmunology. 3:e974382.
  4. Ahmad J, Mir SR, Kohli K, Chuttani K, Mishra AK, Panda AK, Amin S. (2014) Solid-nanoemulsion preconcentrate for oral
  5. delivery of paclitaxel: formulation design, biodistribution, and γ scintigraphy imaging. Biomed Res Int. 984756.
  6. Almaden JV, Tsui R, Liu YC, Birnbaum H, Shokhirev MN, Ngo KA, Davis-Turak JC,Otero D, Basak S, Rickert RC, Hoffmann A.(2014) A pathway switch directs BAFF signalingto distinct NFκB transcription factors in maturing and proliferating B cells. Cell Rep. 9:2098-2111.
  7. Amin A, Mokhdomi TA, Bukhari S, Wani SH, Wafai AH, Lone GN, Qadri A, Qadri RA.(2014) Tectorigenin ablates the
  8. inflammation-induced epithelial-mesenchymal transitionin a co-culture model of human lung carcinoma. Pharmacol Rep. 67:382-387.
  9. Anish C, Upadhyay AK, Sehgal D, Panda AK. (2014) Influences of process and formulation parameters on powder flow
  10. properties and immunogenicity of spray dried polymer particles entrapping recombinant pneumococcal surface protein
  11. A. Int J Pharm. 466:198-210.
  12. Anish C, Khan N, Upadhyay AK, Sehgal D, Panda AK. (2014) Delivery of polysaccharides using polymer particles: implications on size-dependent immunogenicity, opsonophagocytosis, and protective immunity. Mol Pharm. 11:922-937.
  13. Appaiahgari MB, Glass R, Singh S, Taneja S, Rongsen-Chandola T, Bhandari N, Mishra S, Vrati S. (2014) Transplacental rotavirus IgG interferes with immune response to live oral rotavirus vaccine ORV-116E in Indian infants. Vaccine. 32:651-656.
  14. Arora S, Verma S, Banerjea AC. (2014) HIV-1 Vpr redirects host ubiquitination pathway. J Virol. 88:9141-9152.
  15. Bhandari N, Rongsen-Chandola T, Bavdekar A, John J, Antony K, Taneja S, Goyal N, Kawade A, Kang G, Rathore SS, Juvekar S, Muliyil J, Arya A, Shaikh H, Abraham V, Vrati S, Proschan M, Kohberger R, Thiry G, Glass R, Greenberg HB, Curlin G, Mohan K, Harshavardhan GV, Prasad S, Rao TS, Boslego J, Bhan MK; India Rotavirus Vaccine Group. (2014) Efficacy of a monovalent human-bovine (116E) rotavirus vaccine in Indian children in the second year of life. Vaccine. 32:110-116
  16. Bhatia B, Ponia SS, Solanki AK, Dixit A, Garg LC. (2014) Identification of glutamate ABC-Transporter component in
  17. Clostridium perfringens as a putative drug target. Bioinformation. 10:401-405.
  18. Bhatia B, Solanki AK, Kaushik H, Dixit A, Garg LC. (2014) B-cell epitope of beta toxin of Clostridium perfringens genetically conjugated to a carrier protein: expression, purification and characterization of the chimeric protein. Protein Expr Purif. 102:38-44.
  19. Bhattacharya I, Basu S, Sarda K, Gautam M, Nagarajan P, Pradhan BS, Sarkar H, Devi YS, Majumdar SS.(2014) Low levels of Gαs and Ric8b in testicular sertoli cells mayunderlie restricted FSH action during infancy in primates. Endocrinology. 156:1143-1155.
  20. Bhattacharya K, Bag AK, Tripathi R, Samanta SK, Pal BC, Shaha C, Mandal C.(2014) Mahanine, a novel mitochondrial
  21. complex-III inhibitor induces G0/G1 arrest through redox alteration-mediated DNA damage response and regresses glioblastoma multiforme. Am J Cancer Res. 4:629-647.
  22. Bhattacharjee J, Kumar JM, Arindkar S, Das B, Pramod U, Juyal RC, Majumdar SS, Nagarajan P. (2014) Role of
  23. immunodeficient animal models in the development of fructose induced NAFLD. J Nutr Biochem. 25:219-226.
  24. Bhullar D, Jalodia R, Kalia M, Vrati S. (2014) Cytoplasmic translocation ofpolypyrimidine tract-binding protein and its binding to viral RNA during Japaneseencephalitis virus infection inhibits virus replication. PLoS One. 9:e114931.
  25. Biswas T, Pawale VS, Choudhury D, Roy RP. (2014) Sorting of LPXTG peptides by archetypal sortase A: role of invariant substrate residues in modulating the enzyme dynamics and conformational signature of a productive substrate. Biochemistry. 53:2515-2524.
  26. Chamoli M, Singh A, Malik Y, Mukhopadhyay A. (2014) A novel kinase regulates dietary restriction-mediated longevity in
  27. Caenorhabditis elegans. Aging Cell. 13:641-655.
  28. Chatrath S, Gupta VK, Garg LC. (2014) The PGRS domain is responsible for translocation of PE_PGRS30 to cell poles while the PE and the C-terminal domains localize it to the cell wall. FEBS Lett. 588:990-994.
  29. Chawla Y, Upadhyay S, Khan S, Nagarajan SN, Forti F, Nandicoori VK. (2014) Protein kinase B (PknB) of Mycobacterium tuberculosis is essential for growth of the pathogen in vitro as well as for survival within the host. J Biol Chem. 289:13858-13875.
  30. Chopra A, Batra JK. (2014) Antimicrobial activity of human eosinophil granule proteins. Methods Mol Biol. 1178:267-281.
  31. Damle NP, Mohanty D. (2014) Deciphering kinase-substrate relationships by analysis of domain-specific phosphorylation network. Bioinformatics. 30:1730-1738.
  32. Damle NP, Mohanty D. (2014) Mechanism of autophosphorylation of mycobacterial PknB explored by molecular dynamics simulations. Biochemistry. 53:4715-4726.
  33. Dash P, Sahoo PK, Gupta PK, Garg LC, Dixit A. (2014) Immune responses and protective efficacy of recombinant outer membrane protein R (rOmpR)-based vaccine of Aeromonas hydrophila with a modified adjuvant formulation in rohu (Labeo rohita). Fish Shellfish Immunol. 39:512-523.
  34. Ezougou CN, Ben-Rached F, Moss DK, Lin JW, Black S, Knuepfer E, Green JL, Khan SM, Mukhopadhyay A, Janse CJ, Coppens
  35. I, Yera H, Holder AA, Langsley G. (2014) lasmodium falciparum Rab5B is an N-terminally myristoylated Rab GTPase that is targeted to the parasite's plasma and food vacuole membranes. PLoS One. 9:e87695.
  36. Gupta S, De S, Srivastava V, Hussain M, Kumari J, Muniyappa K, Sengupta S. (2014) RECQL4 and p53 potentiate the activity
  37. of polymerase γ and maintain the integrity of the human mitochondrial genome. Carcinogenesis. 35:34-45.
  38. Gupta SK. (2014) Unraveling the intricacies of mammalian fertilization. Asian J Androl. 16:801-802.
  39. Gupta SK, Shrestha A, Minhas V. (2014) Milestones in contraceptive vaccines development and hurdles in their application. Hum Vaccin Immunother. 10:911-925.
  40. Gupta S, Neogi U, Srinivasa H, Banerjea AC, Shet A. (2014) HIV-1 coreceptor tropism in India: increasing proportion of X4-tropism in subtype C strains over two decades. J Acquir Immune Defic Syndr. 65:397-404.
  41. Gupta SK. (2014) Role of zona pellucida glycoproteins during fertilization in humans. J Reprod Immunol. 108:90-97
  42. Haque MA, Ubaid-Ullah S, Zaidi S, Hassan MI, Islam A, Batra JK, Ahmad F. Characterization of phre-molten globule state of yeast iso-1-cytochrome c and its deletants at pH 6.0 and 25°C. Int J Biol Macromol. 72:1406-1418.
  43. Haque AS, Patel KD, Deshmukh MV, Chhabra A, Gokhale RS, Sankaranarayanan R. (2014) Delineating the reaction mechanism of reductase domains of Nonribosomal Peptide Synthetases from mycobacteria. J Struct Biol. 187:207-214.
  44. Jain Y, Upadhyay P. (2014) An inexpensive and 'do it yourself' infant warmer without electricity. Natl Med J India. 27:55.
  45. Juyal G, Negi S, Sood A, Gupta A, Prasad P, Senapati S, Zaneveld J, Singh S, Midha V, van Sommeren S, Weersma RK, Ott J, Jain S, Juyal RC, Thelma BK. (2014) Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis. Gut. 64:571-579.
  46. Karan S, Kaushik H, Saini N, Sahoo PK, Dixit A, Garg LC. (2014) Genomic cloning and sequence analysis of Interleukin-10
  47. from Labeo rohita. Bioinformation. 10:623-689.
  48. Khan N, Qadri RA, Sehgal D. (2014) Anti-Pneumococcal surface protein A monoclonal antibodies: Correlation between in vitro complement deposition and passive mouse protection. Clin Vaccine Immunol. 22:99-107
  49. Khan T, Salunke DM. (2014) Adjustable locks and flexible keys: plasticity of epitope-paratope interactions in germline antibodies. J Immunol. 192:5398-5405.
  50. Khater S, Mohanty D. (2014) Genome-wide search for eliminylating domains reveals novel function for BLES03-like proteins. Genome Biol Evol. 6:2017-2033.
  51. Khuroo T, Verma D, Talegaonkar S, Padhi S, Panda AK, Iqbal Z. (2014) Topotecan-tamoxifen duple PLGA polymeric nanoparticles: investigation of in vitro, in vivo and cellular uptake potential. Int J Pharm. 473:384-394.
  52. Kumar P, Tripathi A, Ranjan R, Halbert J, Gilberger T, Doerig C, Sharma P. (2014) Regulation of Plasmodium falciparum development by calcium-dependent protein kinase 7 (PfCDPK7). J Biol Chem. 289:20386-20395.
  53. Kumar R, Sharma YP, Thakur JS, Patro BK, Bhatia A, Singh IP, Rana SK, Chakraborti A, Dhanda V, Sapru S, Sharma M, Shah B, Ganguly NK. (2014) Streptococcal pharyngitis, rheumatic fever and rheumatic heart disease: Eight-year prospective surveillance in Rupnagar district of Punjab, India. Natl Med J India. 27:70-75.
  54. Kochat V, Baligar P, Maiwall R, Mukhopadhyay A. (2014) Bone marrow stem-cell therapyfor genetic and chronic liver
  55. diseases. Hepatol Int. 8:166-178.
  56. Kumar P, Tyagi R, Das G, Bhaskar S. (2014) Mycobacterium indicus pranii and Mycobacterium bovis BCG lead to differential macrophage activation in Toll-like receptor-dependent manner. Immunology. 143:258-268.
  57. Kumar S, Jain KK, Singh A, Panda AK, Kuhad RC. (2014) Characterization ofrecombinant pectate lyase refolded from inclusion bodies generated in E. coliBL21(DE3). Protein Expr Purif. 110:43-51.
  58. Mohankumar K, Pajaniradje S, Sridharan S, Singh VK, Ronsard L, Banerjea AC, Benson CS, Coumar MS, Rajagopalan R. (2014) Mechanism of apoptotic induction in human breast cancer cell, MCF-7, by an analog of curcumin in comparison with curcumin--an in vitro and in silico approach. Chem Biol Interact. 210:51-63.
  59. Nand KN, Gupta JC, Panda AK, Jain SK. (2014) Development of a recombinant hCG-specific single chain immunotoxin
  60. cytotoxic to hCG expressing cancer cells. Protein Expr Purif. 106:10-17.
  61. Natarajan VT, Ganju P, Ramkumar A, Grover R, Gokhale RS. (2014) Multifaceted pathways protect human skin from UV radiation. Nat Chem Biol. 10:542-551.
  62. Pandharkar T, Zhu X, Mathur R, Jiang J, Schmittgen TD, Shaha C, Werbovetz KA. (2014) Studies on the antileishmanial mechanism of action of the arylimidamide DB766: azole interactions and role of CYP5122A1. Antimicrob Agents Chemother. 58:4682-4689.
  63. Pandit A, Jain V, Kumar N, Mukhopadhyay A. (2014) PHA-4/FOXA-regulated microRNA feed forward loops during
  64. Caenorhabditis elegans dietary restriction. Aging (AlbanyNY). 6:835-855.
  65. Pasi S, Kant R, Gupta S, Surolia A. (2014) Novel multimeric IL-1 receptor antagonist for the treatment of rheumatoid arthritis. Biomaterials. 42:121-133.
  66. Panwar D, Rawal L, Ali S. Molecular docking uncovers TSPY binds more efficiently with eEF1A2 compared to eEF1A1. J Biomol Struct Dyn. 33:1412-1423
  67. Pathak C, Ranjan Singh R, Yadav S, Kapoor N, Raina V, Gupta S, Surolia A. (2014) Evaluation of benzothiophene carboxamides as analgesics and anti-inflammatory agents. IUBMB Life. 66:201-211
  68. Pawar R, Das T, Mishra S, Nutan, Pancholi B, Gupta SK, Bhat SV. Synthesis, anti-HIV activity, integrase enzyme inhibition and molecular modeling of catechol, hydroquinone and quinol labdane analogs. Bioorg Med Chem Lett. 24:302-307.
  69. Perdomo D, Aït-Ammar N, Syan S, Sachse M, Jhingan GD, Guillén N. (2014) Cellular and proteomics analysis of the endomembrane system from the unicellular Entamoeba histolytica. J Proteomics. 112:125-140.
  70. Petropolis DB, Faust DM, Deep Jhingan G, Guillen N. (2014) A new human 3D-liver model unravels the role of galectins in liver infection by the parasite Entamoeba histolytica. PLoS Pathog. 10:e1004381.
  71. Prakash S, Sundd M, Guptasarma P. (2014)The key to the extraordinary thermal stability of P. furiosus holo-rubredoxin: iron binding-guided packing of a core aromatic cluster responsible for high kinetic stability of the native structure. PLoS One. 9:e89703.
  72. Rajanala K, Sarkar A, Jhingan GD, Priyadarshini R, Jalan M, Sengupta S, Nandicoori VK. (2014) Phosphorylation of
  73. nucleoporin Tpr governs its differential localization and is required for its mitotic function. J Cell Sci. 127:3505-3520.
  74. Rajmohan G, Admane P, Anish C, Panda AK. (2014) Fusion and self-assembly of biodegradable polymer particles into scaffoldlike and membranelike structures at room temperature for regenerative medicine. Mol Pharm. 11:2190-2202.
  75. Rane S, Das R, Ranganathan V, Prabhu S, Das A, Mattoo H, Durdik JM, George A, Rath S, Bal V. (2014) Peripheral residence of naïve CD4 T cells induces MHC classII-dependent alterations in phenotype and function. BMC Biol. 12:106.
  76. Ronsard L, Lata S, Singh J, Ramachandran VG, Das S, Banerjea AC. (2014) Molecular and genetic characterization of natural HIV-1 Tat Exon-1 variants from North India and their functional implications. PLoS One. 9:e85452.
  77. Saini AS, Shenoy GN, Rath S, Bal V, George A. (2014) Inducible nitric oxide synthase is a major intermediate in signaling pathways for the survival of plasma cells. Nat Immunol. 15:275-282.
  78. Saroj DC, Singh KH, Anant A, Biswal BK. (2014) Overexpression, purification, crystallization and structure determination of AspB, a putative aspartate aminotransferase from Mycobacterium tuberculosis. Acta Crystallogr F Struct Biol Commun. 70:928-932.
  79. Sharma M, Rawal L, Panwar D, Sehgal N, Ali S. (2014) Differential expression of Homeobox C11 protein in water buffalo
  80. Bubalus bubalis and its putative 3D structure. BMC Genomics. 15: 638.
  81. Saxena S, Devi PB, Soni V, Yogeeswari P, Sriram D. (2014) Identification of novel inhibitors against Mycobacterium tuberculosis L-alanine dehydrogenase (MTB-AlaDH) through structure-based virtual screening. J Mol Graph Model. 47:37-43.
  82. Shrestha A, Srichandan S, Minhas V, Panda AK, Gupta SK. (2014) Canine zona pellucida glycoprotein-3: Up-scaled
  83. production, immunization strategy and its outcome on fertility. Vaccine. 33:133-140.
  84. Shrestha A, Wadhwa N, Gupta SK. (2014) Evaluation of recombinant fusion protein comprising dog zona pellucida glycoprotein-3 and Izumo and individual fragments as immunogens for contraception. Vaccine. 32:564-571.
  85. Shembekar N, Mallajosyula VV, Chaudhary P, Upadhyay V, Varadarajan R, Gupta SK. (2014) Humanized antibody neutralizing 2009 pandemic H1N1 virus. Biotechnol J. 9:1594-603
  86. Sinha A, Gulati A, Saini S, Blanc C, Gupta A, Gurjar BS, Saini H, Kotresh ST, Ali U, Bhatia D, Ohri A, Kumar M, Agarwal I, Gulati S, Anand K, Vijayakumar M, Sinha R, Sethi S, Salmona M, George A, Bal V, Singh G, Dinda AK, Hari P, Rath S, Dragon-Durey MA, Bagga A; Indian HUS Registry. (2014) Prompt plasma exchanges and immunosuppressive treatment improves the outcomes of anti-factor H autoantibody-associated hemolytic uremic syndrome in children. Kidney Int. 85:1151-1160.
  87. Singh S, Suri A. (2014) Targeting the testis-specific heat-shock protein 70-2 (HSP70-2) reduces cellular growth, migration,
  88. and invasion in renal cell carcinoma cells. Tumour Biol. 35:12695-12706.
  89. Suman P, Gupta SK. (2014) STAT3 and ERK1/2 cross-talk in leukaemia inhibitory factor mediated trophoblastic JEG-3 cell invasion and expression of mucin 1 and Fos. Am J Reprod Immunol. 72:65-74.
  90. Tripathi R, Ash D, Shaha C. (2014) Beclin-1-p53 interaction is crucial for cell fate determination in embryonal carcinoma cells. J Cell Mol Med. 18:2275-2286.
  91. Tiwari G, Mohanty D. (2014) Structure-based multiscale approach for identification of interaction partners of PDZ domains. J Chem Inf Model. 54:1143-1156.
  92. Upadhyay AK, Singh A, Mukherjee KJ, Panda AK. (2014) Refolding and purification of recombinant L-asparaginase from inclusion bodies of E. coli into active tetrameric protein. Front Microbiol. 5:486.
  93. Vijayan V, Khandelwal M, Manglani K, Gupta S, Surolia A. Methionine down-regulates TLR4/MyD88/NF-κB signalling in osteoclast precursors to reduce bone loss during osteoporosis. Br J Pharmacol. 171:107-121.
  94. Yadav SK, Kumari A, Javed S, Ali S. (2014) DYZ1 arrays show sequence variation between the monozygotic males. BMC Genet. 15:19.